Monday, February 4, 2013

Chapter outline: Microbial life in extreme low-biomass environments–a genetic approach


Proposed title:  Microbial life in extreme low-biomass environments – a genetic approach

Chapter no.: _________

 

Author(s):                      Venkateswaran, K., M.T. La Duc, P. Vaishampayan, and J.A. Spry

                                         Jet Propulsion Lab, California Institute of Technology

                                         M/S: 89-2; Biotechnology and Planetary Protection

                                         4800, Oakgrove Dr., Pasadena, CA 91109

Correspondence:         kjvenkat@jpl.nasa.gov; Tel: (818) 393-1481; Fax: (818) 393-4176

 

Proposed topics


1.      ATP as a biomarker of viable microorganisms in clean-room facilities.



4.      Differential recovery of phylogenetically disparate microbes from spacecraft-qualified metal surfaces.

B.     Cultivable and problematic microbes of spacecraft and associated surfaces

5.      Microbial characterization of the Mars Odyssey spacecraft and its encapsulation facility.


7.      Recurrent isolation of extremotolerant bacteria from the clean room where Phoenix spacecraft components were assembled.

8.      Extreme spore UV resistance of Bacillus pumilus isolates obtained from an ultraclean spacecraft assembly facility.

9.      Recurrent isolation of hydrogen peroxide-resistant spores of Bacillus pumilus from a spacecraft assembly facility.


10.   Survival of spacecraft-associated microorganisms under simulated martian UV irradiation.



13.   Rapid inactivation of seven Bacillus spp. under simulated Mars UV irradiation.

14.   Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032.


15.   Molecular microbial community structure of the Regenerative Enclosed Life Support Module Simulator air system.

16.   Impact of assembly, testing, and launch operations on the airborne bacterial diversity within a spacecraft assembly facility clean-room.



19.   Diversity of anaerobic microbes in spacecraft assembly clean rooms.

20.   Archaeal diversity analysis of spacecraft assembly clean rooms.

21.   Comprehensive Census of Bacteria in Clean Rooms by Using DNA Microarray and Cloning Methods.

22.   Comparison of Innovative Molecular Approaches and Standard Spore Assays for Assessment of Surface Cleanliness.

23.   High-density 16S microarray and clone library-based microbial community composition of the Phoenix spacecraft assembly clean room.

24.   Pyrosequencing-derived bacterial, archaeal, and fungal diversity of spacecraft hardware destined for Mars.


 

Chapter Highlights

The following concepts will be conveyed in this chapter:

       I.          Effectiveness of sample collection methods and efficacy of sample processing in measuring molecular microbial community of low biomass surfaces

     II.          Are molecular methods comprehensive enough to measure microbial diversity?

    III.          Are clean surfaces selectively enriching subset of microbial population?

 

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